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  Whole genome sequencing of cyanobacterium Nostoc sp. CCCryo 231-06 using microfluidic single cell technology

Liu, Y., Jeraldo, P., Herbert, W., McDonough, S., Eckloff, B., Schulze-Makuch, D., de Vera, J.-P., Cockell, C., Leya, T., Baqué, M., Jen, J., Walther-Antonio, M. (2022): Whole genome sequencing of cyanobacterium Nostoc sp. CCCryo 231-06 using microfluidic single cell technology. - iScience, 25, 5, 104291.
https://doi.org/10.1016/j.isci.2022.104291

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Liu, Yuguang1, Author
Jeraldo, Patricio1, Author
Herbert, William1, Author
McDonough, Samantha1, Author
Eckloff, Bruce1, Author
Schulze-Makuch, Dirk2, Author              
de Vera, Jean-Pierre1, Author
Cockell, Charles1, Author
Leya, Thomas1, Author
Baqué, Mickael1, Author
Jen, Jin1, Author
Walther-Antonio, Marina1, Author
Affiliations:
1External Organizations, ou_persistent22              
23.7 Geomicrobiology, 3.0 Geochemistry, Departments, GFZ Publication Database, Deutsches GeoForschungsZentrum, ou_146043              

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 Abstract: The Nostoc sp. strain CCCryo 231-06 is a cyanobacterial strain capable of surviving under extreme conditions and thus is of great interest for the astrobiology community. The knowledge of its complete genome sequence would serve as a guide for further studies. However, a major concern has been placed on the effects of contamination on the quality of sequencing data without a reference genome. Here,we report the use ofmicrofluidic technology combinedwith single cell sequencing and de novo assembly tominimize the contamination and recover the complete genome of the Nostoc strain CCCryo 231-06 with high quality. 100% of the whole genome was recovered with all contaminants removed and a strongly supported phylogenetic tree. The data reported can be useful for comparative genomics for phylogenetic and taxonomic studies. The method used in this work can be applied to studies that require high-quality assemblies of genomes of unknown microorganisms.

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 Dates: 20222022
 Publication Status: Finally published
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 Identifiers: DOI: 10.1016/j.isci.2022.104291
GFZPOF: p4 T5 Future Landscapes
OATYPE: Gold Open Access
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Title: iScience
Source Genre: Journal, SCI, Scopus, oa
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Pages: - Volume / Issue: 25 (5) Sequence Number: 104291 Start / End Page: - Identifier: CoNE: https://gfzpublic.gfz-potsdam.de/cone/journals/resource/20220706
Publisher: Elsevier