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  Long-read based hybrid genome assembly and annotation of snow algal strain CCCryo 101-99 (cf. Sphaerocystis sp., Chlamydomonadales)

Ciftci, O., Zervas, A., Lutz, S., Feord, H., Keuschnig, C., Leya, T., Tranter, M., Anesio, A. M., Benning, L. G. (2024): Long-read based hybrid genome assembly and annotation of snow algal strain CCCryo 101-99 (cf. Sphaerocystis sp., Chlamydomonadales). - Genome Biology and Evolution, 16, 7, evae140.
https://doi.org/10.1093/gbe/evae140

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Ciftci, Ozan1, Author              
Zervas, Athanasios2, Author
Lutz, Stefanie1, Author              
Feord, Helen1, Author              
Keuschnig, Christoph1, Author              
Leya, Thomas2, Author
Tranter, Martyn2, Author
Anesio, Alexandre M.2, Author
Benning, Liane G.1, Author              
Affiliations:
13.5 Interface Geochemistry, 3.0 Geochemistry, Departments, GFZ Publication Database, Deutsches GeoForschungsZentrum, ou_754888              
2External Organizations, ou_persistent22              

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 Abstract: Polar regions harbor a diversity of cold-adapted (cryophilic) algae, which can be categorized into psychrophilic (obligate cryophilic) and cryotrophic (non-obligate cryophilic) snow algae. Both can accumulate significant biomasses on glacier and snow habitats and play major roles in global climate dynamics. Despite their significance, genomic studies on these organisms remain scarce, hindering our understanding of their evolutionary history and adaptive mechanisms in the face of climate change. Here, we present the draft genome assembly and annotation of the psychrophilic snow algal strain CCCryo 101-99 (cf. Sphaerocystis sp.). The draft haploid genome assembly is 122.5 Mb in length and is represented by 664 contigs with an N50 of 0.86 Mb, a Benchmarking Universal Single-Copy Orthologs (BUSCO) completeness of 92.9% (n = 1519), a maximum contig length of 5.3 Mb, and a GC content of 53.1%. In total, 28.98% of the genome (35.5 Mb) contains repetitive elements. We identified 417 non-coding RNAs (ncRNAs) and annotated the chloroplast genome. The predicted proteome comprises 14,805 genes with a BUSCO completeness of 97.8%. Our preliminary analyses reveal a genome with a higher repeat content compared to mesophilic chlorophyte relatives, alongside enrichment in gene families associated with photosynthesis and flagella functions. Our current data will facilitate future comparative studies, improving our understanding of the likely response of polar algae to a warming climate as well as their evolutionary trajectories in permanently cold environments.

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Language(s): eng - English
 Dates: 20242024
 Publication Status: Finally published
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 Identifiers: DOI: 10.1093/gbe/evae140
OATYPE: Gold Open Access
GFZPOF: p4 T5 Future Landscapes
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Title: Genome Biology and Evolution
Source Genre: Journal, SCI, Scopus, oa
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Pages: - Volume / Issue: 16 (7) Sequence Number: evae140 Start / End Page: - Identifier: CoNE: https://gfzpublic.gfz-potsdam.de/cone/journals/resource/202407081
Publisher: Oxford University Press