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Journal Article

MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Authors

Nata’ala,  Muhammad Kabiru
External Organizations;

Avila Santos,  Anderson P.
External Organizations;

Coelho Kasmanas,  Jonas
External Organizations;

/persons/resource/abartho

Bartholomäus,  Alexander
3.7 Geomicrobiology, 3.0 Geochemistry, Departments, GFZ Publication Database, Deutsches GeoForschungsZentrum;

Saraiva,  João Pedro
External Organizations;

Godinho Silva,  Sandra
External Organizations;

Keller-Costa,  Tina
External Organizations;

Costa,  Rodrigo
External Organizations;

Gomes,  Newton C. M.
External Organizations;

Ponce de Leon Ferreira de Carvalho,  André Carlos
External Organizations;

Stadler,  Peter F.
External Organizations;

Sipoli Sanches,  Danilo
External Organizations;

Nunes da Rocha,  Ulisses
External Organizations;

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Fulltext (public)

5014073.pdf
(Publisher version), 3MB

Supplementary Material (public)
There is no public supplementary material available
Citation

Nata’ala, M. K., Avila Santos, A. P., Coelho Kasmanas, J., Bartholomäus, A., Saraiva, J. P., Godinho Silva, S., Keller-Costa, T., Costa, R., Gomes, N. C. M., Ponce de Leon Ferreira de Carvalho, A. C., Stadler, P. F., Sipoli Sanches, D., Nunes da Rocha, U. (2022): MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes. - Environmental Microbiome, 17, 57.
https://doi.org/10.1186/s40793-022-00449-7


Cite as: https://gfzpublic.gfz-potsdam.de/pubman/item/item_5014073
Abstract
Metagenomics is an expanding field within microbial ecology, microbiology, and related disciplines. The number of metagenomes deposited in major public repositories such as Sequence Read Archive (SRA) and Metagenomic Rapid Annotations using Subsystems Technology (MG-RAST) is rising exponentially. However, data mining and interpretation can be challenging due to mis-annotated and misleading metadata entries. In this study, we describe the Marine Metagenome Metadata Database (MarineMetagenomeDB) to help researchers identify marine metagenomes of interest for re-analysis and meta-analysis. To this end, we have manually curated the associated metadata of several thousands of microbial metagenomes currently deposited at SRA and MG-RAST.